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Proceedings
Day 2 - Wednesday, October 10, 2001
WeOA
The Emerging/Future Role of Proteomics in Drug Discovery
Discussion Leader: Gary A. Valaskovic, New Objective, Inc.
Proteomics is emerging as a powerful paradigm in the post genomic era,
one that is positioned to significantly impact drug discovery. It is
clear that in the effort to link the proteome with the greater endeavor
of drug discovery and development, mass spectrometry will be key for
success. This session will highlight the role mass spectrometry plays
in the "industrialized" proteomics environment, and provide a glimpse
perhaps into the future of drug discovery.
David R. Goodlett, The Institute for Systems Biology
Keith Rose, GeneProt Inc.
Scaling of Proteomics Methods
Reid Townsend, Oxford GlycoSciences (UK) Ltd.
Roundtable Discussion 4
WeOB
Pharmaceutical Property Profiling: Metrics and Implementation
Discussion Leader: Edward H. Kerns, Wyeth-Ayerst Research
In recent years, drug discovery organizations have recognized the value
of profiling the properties of candidate compounds throughout all the
phases of drug exploration and discovery. This interest has resulted
from the recognition that physicochemical, pharmacokinetic, and toxicity
properties of compound determine how much compound is safely delivered
to the target tissue. Modern medicinal chemistry strategies produce
compounds having very high binding affinity, but if they have poor
properties these compounds will not become useful pharmaceutical
products. This session focuses on properties that drug discovery
organizations have selected to measure in early discovery, how these
assays have been implemented, and the benefits that these efforts have
had on drug discovery research.
Franco Lombardo, M. Shalaeva, K. A. Tupper, F. Gao, B. D. Bissett. Pfizer Global R&D
High Throughput, High Quality Automated Structural Integrity and Permeability Measurements for Drug Discovery
Jonathan Joseph and Mark Sanders, Bristol-Myers Squibb
John A. Masucci, RW Johnson Research Institute
Roundtable Discussion 5
WeOC
Vendor/Exhibitor Session - Mass Spectrometry and Data Management
Discussion Leaders: Bradley L. Ackermann, Eli Lilly and Co., Daniel B. Kassel, DuPont Pharmaceuticals
The proliferation of MS technology has created bottlenecks in the area
of data management along with a demand for software tools not
traditionally supplied by MS vendors. A number of companies have
created unique solutions for MS data management issues, often partnering
with MS vendors to deliver integrated solutions to data management. A
number of software tools for the manipulation of MS data have also
appeared. In this session, we will hear the perspective of end users
who have implemented various MS related software packages and their
vision for future direction in this rapidly evolving area.
MS Archiving Using NuGenesis
Cynthia Palmer, Schering-Plough Research Institute
NeoChem Software Applications
Gregory Nemeth, DuPont Pharmaceuticals
Branden Humphrey, Pfizer
Nigel Clarke, Schering-Plough Research Institute
Roundtable Discussion 6
WeOD
Hyphenated NMR Methods in Pharmaceutical R&D
Discussion Leader: Michael D. Reily, Pfizer Global R&D
NMR spectroscopy has long played a critical role in pharmaceutical R&D,
with structure elucidation applications ranging from small molecules to
medium sized proteins. To meet the challenge of high throughput
technologies that are pervasive in todayıs research paradigms, new NMR
systems have been developed and are becoming commonplace. These systems
are built around NMR flow cells that replace the traditional NMR tube
and allow the integration of liquid chromatography and higher throughput
liquid robots. The session will introduce examples of these hyphenated
NMR methods, specifically applications of LC-NMR, LC-NMR-MS and
high-throughput direct injection NMR toward metabolite identification
and combinatorial chemistry characterization.
Cathy D. Moore, Pfizer Global R&D
Melissa Lin, Wyeth-Ayerst Research
Roundtable Discussion 7
WeOE
Strategies for Overcoming the Bottlenecks in Assessing Toxicity
Discussion Leader: Lori Gallenberg, Abbott Laboratories
This session highlights new strategies, methods and technologies that
are being utilized in safety assessment to provide a more rapid and
mechanistic assessment of toxicologic liabilities and ADME parameters of
new pharmaceuticals. The techniques discussed will include both
innovative and new technologies as well as standard testing paradigms.
Additionally, the ability of these techniques to improve the drug
discovery and development process will also be presented.
A. David Rodrigues, Merck & Co, Inc
Lori Gallenberg, Abbott Laboratories
Poster Session
Chairs: Narayanan Surendran, Pfizer Global R&D, and Antony Williams, Advanced Chemistry Development
Poster Session Summary
Web-based and Network Distribution of Chromatographic Methods
Michael McBrien, Antony Williams, and Eduard Kolovanov
Advanced Chemistry Development Inc., Toronto, Ontario, Canada
Compare LCMS - Extracting Component Differences in Similar LC/MS
Data Sets
Willem Windig, Bill Nichols, Antony Williams, Ilya Troitsky and Vitaly Lashin
Advanced Chemistry Development Inc., Toronto, Ontario, Canada
Speeding Up Drug Discovery From Quality Lead Selection Through
Complete Compound Document Creation Using Scientific Data Management
Victoria Lander
NuGenesis Technologies Corporation, Westborough, MA
Using ACD/MS Manager Software for EI-MS Interpretation and
Structural Confirmation of Oxazolidinones
Timothy J. Nieuwenhuis1, David M. Guido1, Bruno J.D. Vansina1, James E. Carlson1, Olga V.
Nemirovskiy2, W. Rodney Mathews1, and Antony J. Williams3
1Pharmacia Corporation, Kalamazoo, MI 49007
2 Pharmacia Corporation, St. Louis, MO 63198
3Advanced Chemistry Development, Toronto, Ontario, Canada
Automated Metabolic Stability, Detailed Analysis and Metabolite
Confirmation Using LC/MS and Intelligent Chemometrics
Jeffrey L. Whitney, Mark E. Hail, and David J. Detlefsen
Novatia, LLC, Princeton, NJ
Automated LC/MS Analysis of Biomolecules Using ProMass™
Mark E. Hail, Jeffrey L. Whitney, and David J. Detlefsen
Novatia, LLC, Princeton, NJ
Strategies and Technologies for Communicating Analytical Information
David J. Detlefsen, Jeffrey L. Whitney & Mark E. Hail
Novatia LLC, 301 A College Road East, Princeton, NJ 08540
Identification of Drug Metabolites Using NMR and LC-MS-NMR Methods
Titan Z. Gu2, Yanli Deng1 and Neil Spooner
Worldwide Bioanalysis, DMPK 1 Development DMPK - Upper Merion, DMPK
GlaxoSmithKline Pharmaceuticals, King of Prussia, PA
Packed-column SFC Combined with LC-MS/MS for Metabolites and
Impurities Elucidation in Drug Discovery
Yining Zhao, Jen Wilson, David Chow, David Semin and Ed Maliski
Small Molecule Analytical, Amgen, Inc., Thousand Oaks, CA
Comparative Analysis of the API 4000 to the API 3000 LC/MS/MS
System for Quantitative Analysis of Prostaglandins in Dog Urine: A
Look at Sensitivity, Dynamic Range, and Signal to Noise
Jerry Muhammad1, Hideji Fujiwara1, Mary Triefenbach1,
Gary Impey2, Clevys Monasterios2 and Kevin Duffin1
1 Pharmacia, St. Louis, MO
2 Applied Biosystems / MDS Sciex, Ontario, Canada
Trifolium pratense (Red Clover) Isoflavonoids Analysis Using Structure-Based
MS Software
Antony Williams1, Vitaly Lashin1, Ilya Troisky1, and Michael P. Balogh2
1 Advanced Chemistry Development, Toronto, ON, Canada
2 Waters Corporation, Milford, MA
Immobilized Artificial Membrane (IAM) Chromatography with Mass Spectrometric
Detection: a Rapid Method for Screening Drug-Membrane Interactions
Hanlan Liu, Guy T. Carter, and Mark Tischler
Discovery Analytical Chemistry, Wyeth-Ayerst
Determination of Alprazolam in the Presence of Polypropylene Glycol
Utilizing the High Resolution Capability of a Triple-Quadrupole Mass Spectrometer
Ma'an Amad, Witold Winnik, Hans Schweingruber, Iain Mylchreest and Gary Paul
ThermoFinnigan Corporation
Advantages and Limitations of Increased Mass Resolution for
Quantitative SRM Analysis on a Triple Stage Quadrupole Mass Spectrometer
Hans Schweingruber, Jean-Jacques Dunyach, Terry N.
Olney, Gary Paul, Dennis Taylor, Mark Churchill, Ma'an Amad, Witold
Winnik, Alan E. Schoen, Clay S. Campbell, and Iain Mylchreest
ThermoFinnigan Corporation
Application of Structure-Based LC/MS Database Management for Forensic Analysis
Cozette M. Cuppett1, Michael P. Balogh1, Antony Williams2, Vitaly Lashin2, and Ilya Troisky2
1 Waters Corporation, Milford, MA
2 ACD Labs, Toronto, Canada
LC/MS/MS Quantitation of Polypeptides, Proteins, and Antisense Nucleotides
Yongdong Zhu, Larry Duan, Daniel Meyer, Sherwin Jiang, Zamas Lam, and Ben Chien
Quest Pharmaceuticals Services, L.L.C., Newark,
DE
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